krsa.Rd
Takes in a vector of the peptides that are considered "hits" and kinase-substrate and coverage dataframes and returns the Z score table
krsa(
peptides,
itr = 2000,
seed = 123,
return_count = F,
map_file = KRSA_file,
cov_file = chipCov
)
a vector of the peptides that are considered "hits"
number of iterations for the random sampling (default = 2000)
seed number (default = 123)
boolean to return the kinase count matrix
kinase-substrate dataframe
kinase coverage dataframe
Z score tibble or list if return_count = TRUE
Other core functions:
krsa_group_diff()
,
krsa_quick_filter()
,
krsa_read()
,
krsa_scaleModel()
TRUE
#> [1] TRUE