It prepares a KRSA peptide file (log2 FC) to be used for creedenzymatic — krsa_ce_output_peptides • KRSA

Takes in the Z score table and output kinase with their scores

krsa_ce_output_peptides(peptide_table, metric, file_name)

Arguments

peptide_table: a df of the log2 FC scores of peptides
metric: which col to use as the score (totalMeanLFC, LFC, ... etc)
file_name: file name and path to save file as txt tab delimited file

Value

saved txt file to be used in creedenzymatic

See also

Other helper functions: enrichr_lib_call(), krsa_ce_output_kinases(), krsa_enrichr(), krsa_extractEndPointMaxExp(), krsa_extractEndPoint(), krsa_get_diff_byChip(), krsa_get_diff(), krsa_sampling(), krsa_show_peptides(), krsa_top_hits()