Parse a GCTX file into the workspace as a GCT object

Parse a GCTX file into the workspace as a GCT object

.parse.gctx(fname, rid = NULL, cid = NULL, matrix_only = FALSE)

Arguments

fname	path to the GCTX file on disk
rid	either a vector of character or integer row indices or a path to a grp file containing character row indices. Only these indicies will be parsed from the file.
cid	either a vector of character or integer column indices or a path to a grp file containing character column indices. Only these indicies will be parsed from the file.
matrix_only	boolean indicating whether to parse only the matrix (ignoring row and column annotations)

Details

parse.gctx also supports parsing of plain text GCT files, so this function can be used as a general GCT parser.

See also

Other GCTX parsing functions: .append.dim(), .fix.datatypes(), .process_ids(), .read.gctx.ids(), .read.gctx.meta(), .write.gctx.meta(), .write.gctx(), .write.gct()