Reads a dataframe of Peptides IDs and their Scores and run PTM-SEA

reads a dataframe of Peptides IDs and their Scores (LFC, p-value, ... etc) and run PTM-SEA

read_ptmsea(df, ...)

Arguments

df

dataframe, must have at least Peptide and Score columns
...,

arguments passed to run ptm-sea function
lib

searched PTM-SEA libraries "kinase-substrate" or "all" (default is "kinase-substrate" which will return only kinase libraries like ChengKSIN, PTMsigDB, PhosDAll)

Value

dataframe, Ranked and quartiled table

Details

This function a dataframe of Peptides IDs and their Scores (LFC, p-value, ... etc) and run PTM-SEA