Package index • drugfindR

Convenience Wrappers

Convenience functions to perform the whole analysis in one shot

investigateTarget(): Investigate concordant signatures for a gene or drug
investigateSignature(): Investigate a given DGE dataset

Getting Data

Get data for analysis

getSignature(): Get the L1000 Signature from iLINCS
prepareSignature(): Prepare an L1000 Signature from a given differential gene expression output

Preprocess Data

Preprocess data for downstream analysis

filterSignature(): Filter the L1000 Signature

Perform Analysis

Perform the concordance analysis using iLINCS

getConcordants(): Get concordant signatures from iLINCS database
consensusConcordants(): Generate a Consensus list of Targets