Generates violin plots based on peptides signals intensities — krsa_violin_plot • KRSA

Takes in the scaled dataset from krsa_scaleModel() and plot violin figures using ggplot2

krsa_violin_plot(
  data,
  peptides,
  facet_factor,
  facet = T,
  samples = NULL,
  groups = NULL,
  show_legend = F
)

Arguments

data: the scaled dataset from krsa_scaleModel
peptides: vector of peptides
facet_factor: Column used to facet by. Will be used in facet_wrap(). Needs argument facet to be True.
facet: boolean to facet the plot by a variable
samples: (optional) a vector of sample names
groups: (optional) a vector of group names
show_legend: to show legend (default = FALSE)

Value

ggplot figure

See also

Other plots: krsa_ball_model(), krsa_coverage_plot(), krsa_curve_plot(), krsa_cv_plot(), krsa_heatmap_grouped(), krsa_heatmap(), krsa_histogram_plot(), krsa_reverse_krsa_plot(), krsa_violin_plot_grouped(), krsa_waterfall(), krsa_zscores_plot()

Examples

TRUE
#> [1] TRUE