Generates grouped violin plots based on peptides signals intensities with t tests options — krsa_violin_plot_grouped • KRSA

Takes in the scaled dataset from krsa_scaleModel() and plot violin figures using ggplot2

krsa_violin_plot_grouped(
  data,
  peptides,
  grp_comp = NULL,
  groups = NULL,
  test = F,
  test_method = "wilcox.test",
  violin = TRUE,
  dots = FALSE,
  lines = FALSE,
  avg_line = T,
  ...
)

Arguments

data: the scaled dataset from krsa_scaleModel
peptides: vector of peptides
grp_comp: list of group comparison names
groups: (optional) a vector of group names
test: perform two group test
test_method: type of test (default is wilcox.test)
violin: add violin layer
dots: add dotplot layer
lines: add lines layer
avg_line: draw averaged line across the two groups
...: arguments passed to ggsignif

Value

ggplot figure

See also

Other plots: krsa_ball_model(), krsa_coverage_plot(), krsa_curve_plot(), krsa_cv_plot(), krsa_heatmap_grouped(), krsa_heatmap(), krsa_histogram_plot(), krsa_reverse_krsa_plot(), krsa_violin_plot(), krsa_waterfall(), krsa_zscores_plot()

Examples

TRUE
#> [1] TRUE